Glyma08g09880 - SoyBase

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Report for Sequence Feature Glyma08g09880

Feature Type:	gene_model
Chromosome:	Gm08
Start:	7066552
stop:	7070555
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g09880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G14700	AT	Annotation by Michelle Graham. TAIR10: purple acid phosphatase 3 \| chr1:5058680-5060988 FORWARD LENGTH=366	SoyBase	E_val: 2.00E-152	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0003993	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid phosphatase activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG2679	KOG	Purple (tartrate-resistant) acid phosphatase	JGI		ISS
PTHR10161	Panther	ACID PHOSPHATASE-RELATED	JGI		ISS
PF00149	PFAM	Calcineurin-like phosphoesterase	JGI		ISS
UniRef100_B9SNI4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Tartrate-resistant acid phosphatase type 5, putative n=1 Tax=Ricinus communis RepID=B9SNI4_RICCO	SoyBase	E_val: 8.00E-156	ISS
UniRef100_I1KRQ6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRQ6_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma08g09880

Locus	Gene Symbol	Protein Name
	PAP14	Purple acid phosphatase 14 gene
	PAP14	Purple acid phosphatase gene 13

Expression Patterns of Glyma08g09880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g09880

Paralog	Evidence	Comments
Glyma05g26920	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g09880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g093300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g09880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g09880

Limit To All Plant Sequences

>Glyma08g09880.2   sequence type=transcript   gene model=Glyma08g09880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTATGTTGTTTTTCTGATCTTCTCCAGTTATACACATGTCACATGATTTGCGTTTATAACACACCACTCAGTTAGTGATGTTTGAAAATACCCTCCTAGACATAATTATACATAAAGTTGTCGCCACTTGCTATACTAATCAATCAAAATCCACACACAAAGCTTTCTTTTTTCTCCATCAAATTCTCTGACCTCAACATATGGGGCTGCAGCTTGTTTTCATTGGTACCATAGCCCTGTGTTTGGTTGTTTCCTCGGCAGTGCTTGAGCGGTTTGAACAAGCACTTAAACAAGATGGGTCACTTAGCTTCTTGGTCATTGGAGATTGGGGAAGAAAAGGAGCTTACAACCAATCCAAAGTTGCATTCCAGATGGGAGTTATTGGACAACAATTGGACATCGATTTTGTGATTTCCACCGGCGACAATTTTTATGACAGTGGCTTGACAGGCATAGATGATCCAGACTTTGATACTGCTTCTAGCTTGCAAAAGCAATGGTACAGTGTTTTGGGAAACCACGACTATAGGGGTAATGTTGAGGCACAGCTGAGTCCTGTCCTCACAAATCTTGACAAGAGATGGCTTTGCCTGAGATCTTTTATTGTAAATGCAGAAGTTGCAGAGTTTTTCTTTGTAGATACTACTCCGTTTGTGGACAAATACTTCATAGAACCTAAGGACCATGTTTATGATTGGAGTGGCATATTGCCCCGGAAACAATACATTTCCAACCTACTCAAGGATGTGGATTTAGCTTTACAACAATCAAATGCAAAATGGAAGATTGTGGTGGGTCACCATACAATTAGAAGTGCCGGCGTGCACGGTAATACGGATGAGCTTGTAAAGCAGCTTCTCCCAATTCTTGAGGCAAACAACATTGATCTTTACATAAATGGACACGATCACTGCCTACAACACATAAGCAGTTTTGACAGTGCAATTCAATTTTTGACTTGCGGGGGAGGGTCAAAGGCGTGGAGGGGTGTTGTGAACTGGTGGAAGCCAGAAGAGATGAAGTTCTACTACGATGGCCAAGGAGTCATGTCTGTGAAGGTCACTGAAACTGAAATTGACATAGTATTCTATGATGTCTATGGCCATGTTCTACACAAATGGAACACATCCAAACAGCTTCACGCAAGTTGGTGAACAAGTTCAAGATCGAATCCAAGGCATTTAATTATGAAACAAGAAAAGAAAGAAAAAATAAATCTCGGGGACAAGAAACAAAAGTGCATACAAGATAGGAAAAAACAATTGAGCCCTATCATCTCCCCATCTGGTTTGGCTTCATATTTTACACTATGCAATTGACTAAAATCTGTTGTATAATAGTATCTACGGAAAAAATTCTCTCCATTTCTTTCATTTTTATGATTTTGAAAAAATAAATAATGATATTTTCTATTTAATATGTATTATGTCGATCTATTTTATTTATTTCTCCAAAACTTTAGTAATGAAAAAATGGAGAGGCCGGAAAGAAATGGACAGCATCTACTTTCTGTAATAAACAGATAATGTTCAATTCAATGGGATTTTATATACATGATATCATTATAA

Coding sequences of Glyma08g09880

Limit To All Plant Sequences

>Glyma08g09880.1   sequence type=CDS   gene model=Glyma08g09880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGCTGCAGCTTGTTTTCATTGGTACCATAGCCCTGTGTTTGGTTGTTTCCTCGGCAGTGCTTGAGCGGTTTGAACAAGCACTTAAACAAGATGGGTCACTTAGCTTCTTGGTCATTGGAGATTGGGGAAGAAAAGGAGCTTACAACCAATCCAAAGTTGCATTCCAGATGGGAGTTATTGGACAACAATTGGACATCGATTTTGTGATTTCCACCGGCGACAATTTTTATGACAGTGGCTTGACAGGCATAGATGATCCAGACTTTGATACTGCTTCTAGCTTGCAAAAGCAATGGTACAGTGTTTTGGGAAACCACGACTATAGGGGTAATGTTGAGGCACAGCTGAGTCCTGTCCTCACAAATCTTGACAAGAGATGGCTTTGCCTGAGATCTTTTATTTGCCTTTTTACATTCTTTGTTTCAGAAGTTGCAGAGTTTTTCTTTGTAGATACTACTCCGTTTGTGGACAAATACTTCATAGAACCTAAGGACCATGTTTATGATTGGAGTGGCATATTGCCCCGGAAACAATACATTTCCAACCTACTCAAGGATGTGGATTTAGCTTTACAACAATCAAATGCAAAATGGAAGATTGTGGTGGGTCACCATACAATTAGAAGTGCCGGCGTGCACGGTAATACGGATGAGCTTGTAAAGCAGCTTCTCCCAATTCTTGAGGCAAACAACATTGATCTTTACATAAATGGACACGATCACTGCCTACAACACATAAGCAGTTTTGACAGTGCAATTCAATTTTTGACTTGCGGGGGAGGGTCAAAGGCGTGGAGGGGTGTTGTGAACTGGTGGAAGCCAGAAGAGATGAAGTTCTACTACGATGGCCAAGGAGTCATGTCTGTGAAGGTCACTGAAACTGAAATTGACATAGTATTCTATGATGTCTATGGCCATGTTCTACACAAATGGAACACATCCAAACAGCTTCACGCAAGTTGGTGA

>Glyma08g09880.2   sequence type=CDS   gene model=Glyma08g09880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGCTGCAGCTTGTTTTCATTGGTACCATAGCCCTGTGTTTGGTTGTTTCCTCGGCAGTGCTTGAGCGGTTTGAACAAGCACTTAAACAAGATGGGTCACTTAGCTTCTTGGTCATTGGAGATTGGGGAAGAAAAGGAGCTTACAACCAATCCAAAGTTGCATTCCAGATGGGAGTTATTGGACAACAATTGGACATCGATTTTGTGATTTCCACCGGCGACAATTTTTATGACAGTGGCTTGACAGGCATAGATGATCCAGACTTTGATACTGCTTCTAGCTTGCAAAAGCAATGGTACAGTGTTTTGGGAAACCACGACTATAGGGGTAATGTTGAGGCACAGCTGAGTCCTGTCCTCACAAATCTTGACAAGAGATGGCTTTGCCTGAGATCTTTTATTGTAAATGCAGAAGTTGCAGAGTTTTTCTTTGTAGATACTACTCCGTTTGTGGACAAATACTTCATAGAACCTAAGGACCATGTTTATGATTGGAGTGGCATATTGCCCCGGAAACAATACATTTCCAACCTACTCAAGGATGTGGATTTAGCTTTACAACAATCAAATGCAAAATGGAAGATTGTGGTGGGTCACCATACAATTAGAAGTGCCGGCGTGCACGGTAATACGGATGAGCTTGTAAAGCAGCTTCTCCCAATTCTTGAGGCAAACAACATTGATCTTTACATAAATGGACACGATCACTGCCTACAACACATAAGCAGTTTTGACAGTGCAATTCAATTTTTGACTTGCGGGGGAGGGTCAAAGGCGTGGAGGGGTGTTGTGAACTGGTGGAAGCCAGAAGAGATGAAGTTCTACTACGATGGCCAAGGAGTCATGTCTGTGAAGGTCACTGAAACTGAAATTGACATAGTATTCTATGATGTCTATGGCCATGTTCTACACAAATGGAACACATCCAAACAGCTTCACGCAAGTTGGTGA

Predicted protein sequences of Glyma08g09880

Limit To All Plant Sequences

>Glyma08g09880.1   sequence type=predicted peptide   gene model=Glyma08g09880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLQLVFIGTIALCLVVSSAVLERFEQALKQDGSLSFLVIGDWGRKGAYNQSKVAFQMGVIGQQLDIDFVISTGDNFYDSGLTGIDDPDFDTASSLQKQWYSVLGNHDYRGNVEAQLSPVLTNLDKRWLCLRSFICLFTFFVSEVAEFFFVDTTPFVDKYFIEPKDHVYDWSGILPRKQYISNLLKDVDLALQQSNAKWKIVVGHHTIRSAGVHGNTDELVKQLLPILEANNIDLYINGHDHCLQHISSFDSAIQFLTCGGGSKAWRGVVNWWKPEEMKFYYDGQGVMSVKVTETEIDIVFYDVYGHVLHKWNTSKQLHASW*

>Glyma08g09880.2   sequence type=predicted peptide   gene model=Glyma08g09880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLQLVFIGTIALCLVVSSAVLERFEQALKQDGSLSFLVIGDWGRKGAYNQSKVAFQMGVIGQQLDIDFVISTGDNFYDSGLTGIDDPDFDTASSLQKQWYSVLGNHDYRGNVEAQLSPVLTNLDKRWLCLRSFIVNAEVAEFFFVDTTPFVDKYFIEPKDHVYDWSGILPRKQYISNLLKDVDLALQQSNAKWKIVVGHHTIRSAGVHGNTDELVKQLLPILEANNIDLYINGHDHCLQHISSFDSAIQFLTCGGGSKAWRGVVNWWKPEEMKFYYDGQGVMSVKVTETEIDIVFYDVYGHVLHKWNTSKQLHASW*

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